Wow seriously? This shit is ridiculous. Theres so many applications web/phone/desktop based that have allowed purchases within the application before Apple.
This appears to be a defensive maneuver in Apple's litigation with Lodesys. You obviously didn't read the article so I'll quote part of it here:
"The idea is, in general, very similar to the Lodsys patent, however, it is much more specific. If Apple was granted the rights to the patent, both sides could easily challenge each other's patents. The question, of course, would also be what Apple would do, if this patent is granted, about Android, Windows Phone and Blackberry developers? Most likely nothing, as there are countless iOS developers who offer their apps for multiple platforms and Apple may not have an interest in upsetting them."
Apple has plenty interest in nobbling the Amazon Kindle, though. If that move would deliver value for shareholders, they'd be remiss to not use the patent aggressively over its lifetime.
Maybe the attempt to patent this is just to draw out prior art, submitted by objectors, that could then be turned against Lodsys even if it torpedoes their own application.